A biased random key genetic algorithm for the protein–ligand docking problem
… the best protein–ligand binding affinity, the development of new strategies, the adaptation,
and … to the molecular docking problem are needed. We developed a Biased Random Key …
and … to the molecular docking problem are needed. We developed a Biased Random Key …
[HTML][HTML] Genetic algorithm with a crossover elitist preservation mechanism for protein–ligand docking
B Guan, C Zhang, J Ning - Amb Express, 2017 - amb-express.springeropen.com
… This paper illustrates a novel and robust optimization algorithm (CEPGA) for solving the
protein–ligand docking problems with an aim to overcome the above-mentioned drawback. …
protein–ligand docking problems with an aim to overcome the above-mentioned drawback. …
EDGA: a population evolution direction-guided genetic algorithm for protein–ligand docking
B Guan, C Zhang, J Ning - Journal of Computational Biology, 2016 - liebertpub.com
… evaluate the method, we perform six protein–ligand docking problems from the Brookhaven
Protein Data Bank (PDB) (Berman et al., 2000, 2002). In this article, we compared the …
Protein Data Bank (PDB) (Berman et al., 2000, 2002). In this article, we compared the …
A novel fireworks algorithm for the protein-ligand docking on the autodock
… the protein-ligand docking problem more effectively, we propose an improved fireworks
algorithm called … Guan B in the paper [35] also improved a genetic algorithm with crossover elitist …
algorithm called … Guan B in the paper [35] also improved a genetic algorithm with crossover elitist …
Protein–ligand docking using differential evolution with an adaptive mechanism
… evolutionary algorithms, such as adaptive DE, contributes to solving the protein–ligand
docking … In this study, we attempt to improve the performance of a protein–ligand docking …
docking … In this study, we attempt to improve the performance of a protein–ligand docking …
An efficient ABC_DE_based hybrid algorithm for protein–ligand docking
B Guan, C Zhang, Y Zhao - International journal of molecular sciences, 2018 - mdpi.com
… (LGA), running history information guided genetic algorithm (… the algorithm is more applicable
to solve the protein–ligand … Comparing Algorithm 1 with Algorithm 2, when the p-value …
to solve the protein–ligand … Comparing Algorithm 1 with Algorithm 2, when the p-value …
Rosetta ligand-protein docking with self-adaptive differential evolution
PH Narloch, M Dorn - 2019 IEEE 19th International Conference …, 2019 - ieeexplore.ieee.org
… -adaptive version of Differential Evolution (DE) algorithm, noted as SaDE, in the flexible ligand
rigid receptor (FLRR) molecular docking … genetic algorithm for the protein–ligand docking …
rigid receptor (FLRR) molecular docking … genetic algorithm for the protein–ligand docking …
Comparative study of evolutionary algorithms for protein-ligand docking problem on the AutoDock
… differences between different evolutionary algorithms in protein-ligand docking. The research
shows that search functions constructed by different evolutionary algorithms can achieve …
shows that search functions constructed by different evolutionary algorithms can achieve …
HIGA: a running history information guided genetic algorithm for protein–ligand docking
B Guan, C Zhang, Y Zhao - Molecules, 2017 - mdpi.com
… an LGA-based novel genetic algorithm that enhances the performance of protein-ligand
docking by utilizing the running history information in this article. The proposed algorithm can be …
docking by utilizing the running history information in this article. The proposed algorithm can be …
Docking with autodock4
G Bitencourt-Ferreira, VO Pintro… - Docking Screens for Drug …, 2019 - Springer
… In this tutorial, we show how to perform protein-ligand docking simulations of cyclin-dependent
kinase 2 (… parameters and instructions for the Lamarckian genetic algorithm. Click on …
kinase 2 (… parameters and instructions for the Lamarckian genetic algorithm. Click on …