A biased random key genetic algorithm for the proteinligand docking problem

PF Leonhart, E Spieler, R Ligabue-Braun, M Dorn - Soft Computing, 2019 - Springer
… the best proteinligand binding affinity, the development of new strategies, the adaptation,
and … to the molecular docking problem are needed. We developed a Biased Random Key …

[HTML][HTML] Genetic algorithm with a crossover elitist preservation mechanism for proteinligand docking

B Guan, C Zhang, J Ning - Amb Express, 2017 - amb-express.springeropen.com
… This paper illustrates a novel and robust optimization algorithm (CEPGA) for solving the
proteinligand docking problems with an aim to overcome the above-mentioned drawback. …

EDGA: a population evolution direction-guided genetic algorithm for proteinligand docking

B Guan, C Zhang, J Ning - Journal of Computational Biology, 2016 - liebertpub.com
… evaluate the method, we perform six proteinligand docking problems from the Brookhaven
Protein Data Bank (PDB) (Berman et al., 2000, 2002). In this article, we compared the …

A novel fireworks algorithm for the protein-ligand docking on the autodock

Z Liu, D Jiang, C Zhang, H Zhao, Q Zhao… - Mobile Networks and …, 2021 - Springer
… the protein-ligand docking problem more effectively, we propose an improved fireworks
algorithm called … Guan B in the paper [35] also improved a genetic algorithm with crossover elitist …

Proteinligand docking using differential evolution with an adaptive mechanism

S Song, X Chen, Y Zhang, Z Tang, Y Todo - Knowledge-Based Systems, 2021 - Elsevier
evolutionary algorithms, such as adaptive DE, contributes to solving the proteinligand
docking … In this study, we attempt to improve the performance of a proteinligand docking

An efficient ABC_DE_based hybrid algorithm for proteinligand docking

B Guan, C Zhang, Y Zhao - International journal of molecular sciences, 2018 - mdpi.com
… (LGA), running history information guided genetic algorithm (… the algorithm is more applicable
to solve the proteinligand … Comparing Algorithm 1 with Algorithm 2, when the p-value …

Rosetta ligand-protein docking with self-adaptive differential evolution

PH Narloch, M Dorn - 2019 IEEE 19th International Conference …, 2019 - ieeexplore.ieee.org
… -adaptive version of Differential Evolution (DE) algorithm, noted as SaDE, in the flexible ligand
rigid receptor (FLRR) molecular dockinggenetic algorithm for the proteinligand docking

Comparative study of evolutionary algorithms for protein-ligand docking problem on the AutoDock

Z Liu, C Zhang, Q Zhao, B Zhang, W Sun - Simulation Tools and …, 2019 - Springer
… differences between different evolutionary algorithms in protein-ligand docking. The research
shows that search functions constructed by different evolutionary algorithms can achieve …

HIGA: a running history information guided genetic algorithm for proteinligand docking

B Guan, C Zhang, Y Zhao - Molecules, 2017 - mdpi.com
… an LGA-based novel genetic algorithm that enhances the performance of protein-ligand
docking by utilizing the running history information in this article. The proposed algorithm can be …

Docking with autodock4

G Bitencourt-Ferreira, VO Pintro… - Docking Screens for Drug …, 2019 - Springer
… In this tutorial, we show how to perform protein-ligand docking simulations of cyclin-dependent
kinase 2 (… parameters and instructions for the Lamarckian genetic algorithm. Click on …